No... I don't think it's anything to do with PrimeAnytime. We have little interest in those shows and when I looked, the setting is "Off".
They are recordings we made. I'm about the only one that tries to organize recordings into folders. Obviously, if you don't, that first DVR screen fills with a jumble of recordings. So I try and move the kids stuff in one folder, the wife's murder porn into hers, etc. But when I go to Manage Recordings, I don't see all the recordings on that first DVR screen.
Does it matter if the recordings were scheduled from the Hopper or the Joey? Not sure why that would be, nothing is really stored on the Joey (is it?).